This file contains the phylogenomic trees (Nexus format) inferred by maximum-likelihood under the JTT+F+I+G4 model for:(a) The whole dataset of 121 taxa; 1,526 protein sequences.(b) A subset of Xylari
To infer recombination events in bacterial genomes, we used the maximum likelihood implementation of ClonalFrame, ClonalFrameML. MAGs (only high quality) were aligned with progressiveMauve, which is p
