To infer recombination events in bacterial genomes, we used the maximum likelihood implementation of ClonalFrame, ClonalFrameML. MAGs (only high quality) were aligned with progressiveMauve, which is p
For each of the unique importation events predicted in ClonalFrameML, the table indicates the beginning and ending positions of the region impacted and the gene annotation and ID according to the refe
This file contains the phylogenomic trees (Nexus format) inferred by maximum-likelihood under the JTT+F+I+G4 model for:(a) The whole dataset of 121 taxa; 1,526 protein sequences.(b) A subset of Xylari
