Genes and isoforms whose expression is associated with read length.

The table shows the genes and isoforms that had significant expression level differences between 50 iPSCORE RNA-seq samples with two different read lengths (150 bp vs. 75 bp trimmed). For each gene or isoform, shown are the gene or isoform ID, p-value (paired t-test), FDR (Bonferroni-corrected p-value), source (gene or isoform), gene ID if the source is isoform, and whether the gene or isoform is blacklisted. We blacklisted genes whose expression was significantly different between the 50 samples at the two read lengths or that had isoforms whose expression was significantly different. This resulted in the removal of 1,059 genes and their 8,999 isoforms. (CSV)