Additional file 1 of Propensity scores as a novel method to guide sample allocation and minimize batch effects during the design of high throughput experiments

Additional file 1. This supplementary file includes the code used to develop the optimal allocation algorithm described in the methods section. The following programs are included in this file: (A) data processing, (B) testing association with gene expression, (C) propensity score based sample allocation algorithm, (D) simulating batch effects and testing performance, (E) summarizing performance.