A simple susceptible–infectious–removed epidemic model for smallpox, with birth and death rates based on historical data, produces oscillatory dynamics with remarkably accurate periodicity. Stochastic
This appendix illustrates the process of fitting various parameterisations of the SE1IjR model (M1j) to high-fidelity D1j incidence reports. We mean by parameterisation the decision of categorising mo
Restif2006 - Whooping cough This model is described in the article: Integrating life history and cross-immunity into the evolutionary dynamics of pathogens. Restif O, Grenfell BT.
File with model specification and maximum likelihood parameters of the model with highest likelihood among all models tested ("speciation from a hybrid population at Python Island").
