Genome-scale Analysis of E. coli FNR Reveals Complex Features of Transcription Factor Binding

ChEBI2013-06-20 更新2026-07-21 收录

大肠杆菌基因

转录因子结合分析

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Genome-scale Analysis of E. coli FNR Reveals Complex Features of Transcription Factor Binding

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2013-06-20

Expression data from LoVo and GP5d CRC cell lines

结肠基因表达

转录因子结合分析

TF binding clusters in promoter correlate well with gene expression. We used ChIP-seq to map binding sites of the majority of highly expressed TFs in the cell. The size of clusters of TFs in the promo

NIAID Data Ecosystem100

SMAD3 and SOX4 binding profiling in human breast cell lines. SMAD3 and SOX4 binding profiling in human breast cell lines

转录因子结合分析

乳腺癌分子机制

In order to identify genes co-bound by SOX4 and SMAD3 in the context of breast cancer, different breast cell lines (HMLEs, MDA-MB-231 or HCC-1954) were used. Due to low endogenous expression levels fo

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Determination of Shavenbaby effect on histone marks in S2 cells [chipseq_histone]. Determination of Shavenbaby effect on histone marks in S2 cells [chipseq_histone]

转录因子结合分析

组蛋白修饰

Shavenbaby (Svb) transcription factor is involved in the differenciation of epidermal cells, the homeostasis of intestinal stem cell. Svb is first synthetized as a long repressor protein called SvbRep

NIAID Data Ecosystem30

Investigation of Rap1 binding occupancy in global H3-depletion condition [Rap1_ChIPseq]. Investigation of Rap1 binding occupancy in global H3-depletion condition [Rap1_ChIPseq]

转录因子结合分析

染色质免疫沉淀测序

We constructed the inducible H3-depleted and FLAG-tag of the repressor activator protein 1 (Rap1) yeasts to investigate the depleted effect of nucleosomal H3 on DNA-binding profiles of Rap1 and result

NIAID Data Ecosystem90

Allele-specific binding analysis of rs242561 by NRF2 ChIP tagmentation sequencing

转录因子结合分析

等位基因特异性

We identified a SNP rs242561, located within a regulatory region of the MAPT gene (encoding microtubule-associated protein Tau). It was consistently occupied by NRF2/sMAF in multiple ChIP-seq experime

NIAID Data Ecosystem30

Genome-scale Analysis of E. coli FNR Reveals Complex Features of Transcription Factor Binding

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