SBML models of C. elegans, E. coli and N. meningitidis built using various reconstruction tools.
收藏Figshare2022-09-08 更新2026-04-28 收录
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https://figshare.com/articles/dataset/SBML_models_of_i_C_i_i_elegans_i_i_E_i_i_coli_i_and_i_N_i_i_meningitidis_i_built_using_various_reconstruction_tools_/21067235
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Architect models built using BiGG and KEGG reaction definitions are found in the folders named Architect_BiGG and Architect_KEGG respectively, and those built using CarveMe, ModelSEED and PRIAM are similarly found in the folders thus named. Where applicable, additional settings had to be specified as follows. C. elegans models were built using undefined/complete media and ModelSEED’s core template and BiGG’s main reaction database (in the case of CarveMe and Architect-BiGG reconstructions). E. coli and N. meningitidis models were built under specifications of anaerobic and aerobic (respectively) minimal media conditions and with the specification that a gram-negative organism’s sequences had been input. (ZIP)
创建时间：
2022-09-08
