Additional file 2 of Multi-omic insights into the formation and evolution of a novel shell microstructure in oysters

Additional file 2: Table S1. The de novo assembly statistics of C. nippona genome. Table S2. Comparison of assembly statistics among 16 mollusc genomes. Table S3. Composition of repetitive sequences in the C. nippona genome. Table S4. Statistics of gene predictions of the C. nippona genome. Table S5. Functional annotation of C. nippona predicted genes. Table S6. Statistics of ncRNA annotation in C. nippona. Table S7. Divergent time points used in calibration. Table S8. GO enrichment of unique gene families in Ostreida. Table S9. GO enrichment of expanded gene families in in Ostreida. Table S10. Shell matrix proteins detected from the prismatic (P), foliated (F) and chalky layer (C) of C. nippona. Table S11. Differentially expressed genes of mantle (edge vs centre) of C. nippona. Table S12. Differentially expressed genes of mantle (edge vs centre) of C. nippona during shell repair. Table S13. Conserved orthogroups shared by the shell proteomes of seven molluscs. Table S14. Genomic resources used for molecular phylogenetic analyses of gene families. Table S15. Mapping statistics of transcriptome data used in this study. Table S16. Primers used for real-time PCR and ISH.