Transposable element (TE) subfamily cis-regulatory activities estimated from 441 transgene overexpression experiments in human embryonic stem cells (hESCs)

Additional file 1 from "Statistical learning quantifies transposable element-mediated cis-regulation", Pulver et al.

Raw expression data came from Nakatake et al., Cell Reports 2020

Activities were estimated using craTEs, described in Pulver et al. 2023, with parameter L = 2.5e5 bp.

Rows are transposable element (TE) subfamilies, columns are as follow:

Estimate: estimated cis-regulatory activity, correponds to a linear regression coefficient

Std. Error: standard error of linear regression coefficient

t value: t value corresponding to t-test with H0: Estimate = 0 and HA: Estimate != 0

Pr(>|t|) : probability (p-value) of observing a more extreme t value

p_adj: p-values adjusted with the Benjamini Hochberg procedure

TE: TE subfamily

condition: concatenation of the name of the overexpressed transgene and the timepoint

transgene: symbol for the overexpressed transgene

timepoint: time under transgene induction via DOX treatment