Transposable element (TE) subfamily cis-regulatory activities estimated from 441 transgene overexpression experiments in human embryonic stem cells (hESCs)

Additional file 1 from "Statistical learning quantifies transposable element-mediated cis-regulation", Pulver et al. Raw expression data came from Nakatake et al., Cell Reports 2020 Activities were estimated using craTEs, described in Pulver et al. 2023, with parameter L = 2.5e5 bp. Rows are transposable element (TE) subfamilies, columns are as follow: Estimate: estimated cis-regulatory activity, correponds to a linear regression coefficient Std. Error: standard error of linear regression coefficient t value: t value corresponding to t-test with H0: Estimate = 0 and HA: Estimate != 0 Pr(>|t|) : probability (p-value) of observing a more extreme t value p_adj: p-values adjusted with the Benjamini Hochberg procedure TE: TE subfamily condition: concatenation of the name of the overexpressed transgene and the timepoint transgene: symbol for the overexpressed transgene timepoint: time under transgene induction via DOX treatment