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Gold standard taxonomic profile of the CAMI 2 Mouse Gut Toy data set, samples 0-63

Name: Gold standard taxonomic profile of the CAMI 2 Mouse Gut Toy data set, samples 0-63
Creator: Helmholtz Centre for Infection Research
Published: 2020-01-31T00:00:00+08:00

Zenodo2020-01-31 更新2026-04-07 收录

基因组基准测试

微生物分类学谱分析

数据链接：

https://zenodo.org/record/3632528 数据链接链接失效反馈

官方服务：

资源简介：

<strong>DataURL: </strong> https://data.cami-challenge.org/participate

应用场景：

提供机构：

Helmholtz Centre for Infection Research

创建时间：

2020-01-31

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Spreadsheet with an overview of all 255 strains from the in vitro evolution experiment. The sequenced strains are marked in bold. (XLSX 29 kb)

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Files used to create a new Structural Variant (SV) benchmark colo the cell line COLO829 in reference genome coordinates GRCh38 and CHM13-T2T

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Additional file 3: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

细菌分类学

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a Tree inferred by NDtree, Z-score 1.96, Neighbor Joining tree, contigs from day 1 used as reference. PDF. b Tree inferred by NDtree, Z-score 1.96, Neighbor Joining tree, contigs from day 1 used as re

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Mycobacterium tuberculosis genome sequencing for variant calling benchmarking

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PacBio sequencing was used to sequence and assembly genomes from clinical M. tuberculosis isolates. The PacBio genome assemblies were then used to benchmark variant calling performance of short-read I

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Gold standard taxonomic profile of the CAMI 2 Mouse Gut Toy data set, samples 0-63

资源简介：

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