Cortical cell assemblies and their underlying connectivity: an in silico study

Dataset linked to the article with the same title

simulation_config.zip: contains SONATA config files needed to re-run an exemplary simulation (after downloading the circuit from 10.5281/zenodo.7930275). In order to run it, paths in circuit_config.json, and simulation_config.json have to be updated!

assemblies.h5 is a dataset produced (and can be easily opened) by: assemblyfire (see GitHub README for more documentation) and serves as a basis for the manuscript. As the assemblies are the results of an unsupervised clustering (of high activity time bins) the resulting labels are not necessary meaningful. In the manuscript we have ordered the assemblies (from early to late responding ones, and from pattern A to J responsive ones) but the HDF5 file still stores the original labels. The mapping from the "random" labels to the ones presented in our article is stored in the config files on GitHub.

The development of this dataset was supported by funding to the Blue Brain Project, a research center of the École polytechnique fédérale de Lausanne (EPFL), from the Swiss government’s ETH Board of the Swiss Federal Institutes of Technology.