Additional file 1: Table S1. of Genetic diversity of two Daphnia-infecting microsporidian parasites, based on sequence variation in the internal transcribed spacer region

Number of Daphnia host individuals sampled from each reservoir. Table S2. Comparison between the results of the hierarchical analysis of molecular variance (AMOVA) of spatial population structure for Berwaldia and MIC1, using the dataset before and after clustering with Statistical Parsimony (using QRS pipeline; [42]). Table S3. Comparison of the summary statistics of the ten re-sampled, smaller Berwaldia ITS marker datasets simulating only two populations (“R-1” to “R-10”: 2630 sequences each) and summary statistics calculated for the entire Berwaldia ITS dataset, including all six populations (“Entire”: 18,871 sequences). Table S4. Comparison between the summary statistics of the ten smaller Berwaldia and MIC1 ITS datasets (“B-1” to “B-10” and “M-1 to M-10; 80 and 26 sequences per dataset, respectively) and the summary statistics calculated for the entire Berwaldia and MIC1 ITS datasets (“B-Entire” and “M-Entire”; 18,871 and 2630 sequences, respectively). Table S5. Recombination events detected in the Berwaldia ITS alignment using RDP4. (XLS 31 kb)