We annotated repeats in assemblies through two rounds of annotation with RepeatMasker4.1.0 (Smit et al. 2020), the first round used custom repeat libraries generated by RepeatModeler2 for each respect
RepeatMasker .out and .tbl output for the Ragout chromosome-level assembly for N. diardi and HiC assembly for N. nebulosa . Both assemblies were soft-masked.
