Miller_et_al_Alignments

Folder containing the alignments used for analyses. DN12_rDNA_ML.fas was used in IQ-TREE for the DNA1&2 ML analysis (code used is included at top of file). DN12_rDNA_MrBayes.nex was used in the DNA1&2+rDNA MrBayes analysis (code is at bottom of file). AA_for_ML.phy and rDNA_for_ML.phy were used in IQ-TREE for the AA+rDNA ML analysis (code is contained in the AA_rDNA_ML.nex file). AA_rDNA_Bayes.nex was used in the AA+rDNA MrBayes analysis (code included at the bottom).