The identity and association of top 20 miRNA-target-site SNPs with documented SNP markers in the CEU population.

Ps: the Affymatrix exon array transcript probe set; SNP1: the SNP marker documented in [13]; SNP2: the SNP located in a predicted miRNA targets site in the 3′ UTR region of the corresponding gene; LD: the linkage disequilibrium value between SNP1 and SNP2; TSE: the miRNA target site effect; Adj.p: the FDR corrected p-value for TSE; miRNA: the MiRBase ID(s) of a human miRNA with the SNP2 in the predicted target site. The common prefix “hsa-mir-” in the IDs is omitted. In the rows with bold fonts, the SNP2 is same as the SNP1. See method section for the calculations of LD and TSE. The modules are first ranked and selected by the significance level indicated by adj.p, and then presented by the alphabetic order of the gene names.¶The reference alleles of SNP1 and SNP2 are linked in repulsion phase.