Nano particle structures
收藏Figshare2024-09-13 更新2026-04-28 收录
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https://figshare.com/articles/dataset/Nano_particle_structures/26973409
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资源简介:
1. 1000HEA_structure.tar.gzEach folder contains nanoparticles, which are relaxed via BFGS optimizer using pretrained M3GNet calculator.In each directory, there are several files. The explanation is below:- POSCARinitial structure- CONTCARrelaxed structure- bfgs.trajtrajectory file- bfgs.txttrajectory log file- each_atom_energy.csvatomic_number => atomic numberx,y,z => positionsenergy => atom energy- lse_each_atom_energy.csvatomic_number => atomic numberx,y,z => positionsenergy => atom energy ref_energy => reference energy (atom energy in bulk)lse => lse (energy - ref_energy)Directory name is like IrPdPtRhRu201_{$serial_No}_energy. $serial_No is from 22 to 1021.2. 20HEA_structure.tar.gzEach folder contains nanoparticles, CO, nanoparticles + CO, which are relaxed via BFGS optimizer using pretrained M3GNet calculator.Files in the directory are the same as the 1000HEA_structure.tar.gzDirectory name is like IrPdPtRhRu201_{$serial_No}_energy. $serial_No is from 2 to 21.For the non-linear regressions of adsorption energies and the corresponding LSEs in the paper, $serial_No 2, 3, 4, 5, 6, and 7 are used for the training dataset, while the remaining entries are used for the test dataset.3. mono_nanoparticle_structure.tar.gzEach folder contains nanoparticles, CO and nanoparticles + CO, which are relaxed via BFGS optimizer using pretrained M3GNet calculator.The variety of metal is Ir, Pd, Pt, Rh, Ru. The size of nanoparticle is 38, 79, 116, 201.Files in the directory are the same as the 1000HEA_structure.tar.gz4. DFT_results.tar.gzThe results include DFT calculations performed using VASP at the PBE level with a 400 eV cutoff energy.The data is prepared in two directories: HEA and Mono .In the Mono directory, the results of DFT calculations are stored with the same structure as in mono_nanoparticle_structure.tar.gz.Within the HEA directory, there are three subdirectories: CO, IrPdPtRhRu201, and CO_on_IrPdPtRhRu201. The CO directory contains DFT calculations of the isolated CO molecule. The IrPdPtRhRu201 directory includes subdirectories labeled with $serial_No, similar to 20HEA_structure.tar.gz, each containing the results of DFT calculations for HEA nanoparticles. The CO_on_IrPdPtRhRu201 directory contains the results of DFT calculations for CO molecule adsorption on a total of 19 sites on one of the (111) plane of the HEA nanoparticle of $serial_No = 25. gcn.zipGeneralized Coordination Number (GCN) descriptors for monometallic NPs and HEA NPs are in this folder, corresponding to the LSE.This folder contains csv files. The main values in csv files are below.lse => lse (energy - ref_energy)gcn => gcnads_e => adsorption energy6. HEA146.zipInformation of a regular octahedron HEA NP of 146 atoms are in this folder. The contents are the same as 1000HEA_structure.tar.gz.7. HEA147.zipInformation of an icosahedron HEA NP of 147 atoms structures are in this folder. The content are the same as 1000HEA_structure.tar.gz.
创建时间:
2024-09-13



