Genotype data for genome-wide association study of feed efficiency traits in 299 Large White pigs

This dataset contains quality-controlled SNP and InDel genotype calls from whole-genome resequencing of 299 purebred Large White pigs. The dataset includes 100 individuals sequenced at 30× depth (merged genome-wide VCFs) and 199 individuals sequenced at 10× depth (chromosome-split VCFs). All variants were called against the *Sus scrofa* Sscrofa11.1 reference genome and filtered using standard GATK hard-filtering criteria: QD < 2.0, QUAL < 30.0, FS > 200.0, ReadPosRankSum < -20.0, call rate < 90%, MAF < 0.05. This data supports the findings of the study "Whole-genome resequencing identifies RASAL2 as a candidate gene for feed efficiency in Large White pigs".