Most models of nucleotide or amino acid substitution used in phylogenetic studies assume that the evolutionary process has been homogeneous across lineages and that composition of nucleotides or amino
aThe species corresponding to the RAS is given in parenthesis. bThe call rate value for each RAS is indicated when a sequence was identified. Identification of HPVs by reconstructed ancestral sequence
These are the .fasta files used for ancestral sequence reconstruction in FastML, and .pdb files representing the highest confidence models produced by AlphaFold2.
Ancestral state reconstruction of the habitat stratum of the root node of ants. Support is given as MCMC posterior probabilities and ML mean proportional likelihoods (performed in BayesTraits).
This project contains whole-genome sequences for 9 Dianthus species used for ancestral sequence reconstruction in the manuscript "Climate-induced range shifts drive adaptive response via spatio-tempor