Additional file 10 of Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome

Additional file 10: Table S8. The TM7 pangenome and the functional enrichment analysis. (a) Extended summary information for each of the 40,505 genes that were analyzed in the TM7 pangenomic analysis, including gene cluster (GC) affiliation, functional annotations, contig name, start and stop positions, and functional enrichment information. (b) GC frequencies. (c) Manually selected bins of GCs. (d) COG functions associated with each GC bin. (e) TM7 genes associated with type IV pilus. (f) Functional enrichment output. (g) Summary of prophage predictions using Virsorter, the inovirus detector or manual approaches. (h) Information on contigs that are associated with prophages. (i) Start and stop nucleotide positions for prophages. (j) Genomic information on phage integrases. (k) Genomic information on phage terminases. (l) Output of CRISPRCasFinder. (m) Results of sequence search (using blastn) for CRISPR spacers. (n) Information on terminases identified in TM7 genomes. (o) Blast results of terminases against the NCBI protein database. (p) Blast results for CAS9 sequences. (q) Functional occurrence table for the TM7 pangenome. (r) Functions that are associated with the ‘Extended Core 2’ GC bin and occur in the clade P4 genome (ORAL_P_C_M_MAG_00010).