SVXplorer: three-tier approach to identification of structural variants via sequential recombination of discordant cluster signatures

This repository contains the bgzipped variants calls in VCF format for CHM1, NA12878 and AJ trio dataset that are used in the SVXplorer manuscript. The names of the files contain the name of the sample (CHM1/NA12878/HG002/HG003/HG004), the name of the method (SVXplorer/DELLY/LUMPY/TIDDIT/TARDIS/MANTA) used to call the variants. There are three separate files for the DELLY calls which have the deletions, duplications and the inversion calls made by DELLY for each of the samples. For NA12878, there are two sets of calls, one for each of the libraries (ERR194147/SRR505885)