five

Grayling draft genome dataset

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DataCite Commons2020-09-02 更新2024-07-25 收录
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https://figshare.com/articles/dataset/Grayling_draft_genome_dataset/5135257
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资源简介:
###### Description<br><br>Tthymallus_scaffolds.fasta - Assembled scaffold sequences<br>Tthymallus_RepeatLibrary_deNovo.fasta - De novo repeat library sequences<br>Tthymallus_transcriptome_DeNovo.fasta - De novo transcriptome assembly using Trinity (followed by RSEM based filtering)<br>Tthymallus_transcriptome_ReferenceBased.fasta - Reference-based transcriptome using STAR-Cufflinks-transdecoder pipeline (followed by filtering based on homology to known proteins from zebrafish and stickleback proteins.<br>Tthymallus_ScaffoldAnnotation.gff3 - MAKER pipeline based annotation for the scaffolds.<br>Tthymallus_proteins.fasta - Grayling protein sequences used for inferring orthologous groups (based on MAKER annotations)<br>Tthymallus_maker_fullOutput.gff - Full output from MAKER<br>Tthymallus_CPMcounts.txt - Expression counts for grayling<br>OrthologousGroups.txt - Inferred orthologous groups using Orthofinder<br><br><br>
提供机构:
figshare
创建时间:
2017-06-22
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