Genome-wide chromatin and gene expression profiling during memory formation and maintenance in adult mice. [Data Record 5: DMRs]

This data record contains lists of differentially methylated regions (DMRs). Each tab of this document contains a different compared condition for each time point (1h or 4w), tissue (CA1 or ACC) and cell type (Neu or Non), where tabs with the suffix "_raw" contain all DMRs for adjusted p-value threshold of 0.5, and all other tabs contain annotated DMRs for adjusted p-value 0.1 in C-CS tests or for adjusted p-value 0.05 in N-C and N-CS tests. The compared conditions concern the different sets of mouse, N-C compares naïve (N) to context only (C) mice, N-CS compares naive (N) to context shock (CS) mice, and C-CS compares context only (C) to context shock (CS) mice. For the annotated DMRs, the lists contain columns "Gene name", "Gene type", "Transcript ID" and "Gene structure", corresponding to the gene name, type (protein_coding, long non-coding, miRNA etc.), ENSEMBL transcript ID and structure (intronic, downstream, etc.) for the nearest gene to each DMR. The columns 'chromosome', 'DMR start' and 'DMR end' contain the position in the genome where the DMR was detected (mm10 assembly). The column 'logFC' shows the fold change of the comparison between the conditions in log 2. Columns 'pvalue' and 'p-adjust' contain the pvalue and the adjusted p-value according to the FDR test.