Additional file 2 of Notos - a galaxy tool to analyze CpN observed expected ratios for inferring DNA methylation types

CpG o/e ratios from dbEST analyzed by Notos: data preparation output - table. The data preparation step of Notos carried out for 603 species from dbEST provides the tab-separated file ‘outliers_cutoff.csv’. In the following we provide brief explanation on the content of the columns of this file. Future improvements of Notos may lead to changes, hence consult the the readme section of the galaxy interface. • Name: name of the file analyzed • prop.zero: proportion of observations equal to zero excluded (relative to original sample) • prop.out.2iqr: proportion of values equal excluded if 2 ·IQR was used, relative to sample after exclusion of zeros (0 - 100) • prop.out.3iqr: proportion of values equal excluded if 3 ·IQR was used, relative to sample after exclusion of zeros (0 - 100) • prop.out.4iqr: proportion of values equal excluded if 4 ·IQR was used, relative to sample after exclusion of zeros (0 - 100) • prop.out.5iqr: proportion of values equal excluded if 5 ·IQR was used, relative to sample after exclusion of zeros (0 - 100) • used: IQR used for exclusion of outliers / extreme values • no.obs.raw: number of observations in the original sample • no.obs.nozero: number of observations in sample after excluding values equal to zero • no.obs.clean: number of observations in sample after excluding outliers / extreme values (CSV 75.8 kb)