A comprehensive molecular phylogeny of the brachyuran crab superfamily Xanthoidea provides novel insights into its systematics and evolutionary history

Supplementary Materials and Datasets

Descriptions for files in this folder (alphabetical order):

Alignment:

Aligned sequences in FASTA format

BEAST time calibrated_tree file:

Maximum clade credibility tree for the time-calibrated BEAST analysis

IQTREE_tree file:

Consensus tree for the IQ-TREE maximum likelihood analysis

Partitions:

Gene partitions for the sequence alignment

Rplot_ARD:

Ancestral state reconstruction for the ARD model

Rplot_ER:

Ancestral state reconstruction for the ER model

Table S1: 

Sequences used in this study including their associated museum voucher numbers and GenBank accession numbers. Accession numbers beginning with “MZ” were newly generated for this study. Museum abbreviations are as follows: ZRC=Zoological Reference Collection of the Lee Kong Chian Natural History Museum, National University of Singapore; UF=Florida Museum of Natural History, University of Florida, Gainesville, USA; ULLZ=the University of Louisiana at Lafayette Zoological Collections, USA; MNHN=Muséum National d'histoire Naturelle, Paris;   

NMCR=National Museum of Natural History, Crustacean Collection, Manila, Philippines.

Traits:

Character states for the ancestral state reconstruction analysis. 0 = deep water; 1 = shallow water.