Genotype specific transcriptome assemblies - Fasta files
收藏Figshare2022-02-12 更新2026-04-08 收录
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https://figshare.com/articles/dataset/Genotype_specific_transcriptome_assemblies_-_Fasta_files/18623039/1
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资源简介：
Genotype-specific de novo transcriptome assemblies from sugarcane RNASeq public datasets.<br>RAW RNASeq reads (paired-end and strand-specific) were downloaded from SRA's NCBI, cleaned with BBDuk and putative contaminant reads removed with ContFree-NGS. Clean reads were assembled into transcripts with Trinity using two kmers, 25 and 31. The two assemblies were merged using CD-HIT-EST at 100% identity and keeping strand orientation.
提供机构：
Riano Pachon, Diego Mauricio; Peres, Felipe
创建时间：
2022-02-12
