Dataset and code for article "Expanded detection of BAP1 alterations in cancer and tumor type-specific expression score comparison"

Dataset and code for article titled "Expanded detection of BAP1 alterations in cancer and tumor type-specific expression score comparison". Includes Singularity image for somatic variant calling pipeline. To run Rmd code, first extract data.zip. Extracted data folder and Rmd must be in the same directory for the Rmd to run. Users will also need to ensure that they have all R packages installed. A knit PDF version of the Rmd is included for convenience. At the end of the PDF is a print-out of the runtime sessionInfo for package versions.