Code to analyse immunohistochemistry data

These codes analyse and display capillary characteristics (such as diameters, thickness) from 2D immunohistochemistry images.The fig1.m,fig2.m,fig3.m,fig4.m create images which we are planning to submit for publication in the PNAS journal in an article titled 'Quantitative histomorphometry of capillary microstructure in deep white matter'.There are 3 different fitting methods in these codes which which model the capillaries in the immunohistochemically-labeled histology images with an increasing level of detail, regarding inclination and boundary shape.