PublicData

chdgene_table.csv -->

CHDgene list released 2024-04-05 

(https://chdgene.victorchang.edu.au/)

doi: 10.1161/CIRCGEN.121.003539

Cotney_CirRes_316709_online_table_v.xlsx -->

Gini index 2020-08-09 

(https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7554226/)

doi: 10.1161/CIRCRESAHA.120.316704

E-MTAB-6814.sdrf.txt -->

metadata on how to download mammalian organ development

doi: 10.1038/s41586-019-1338-5

LncBook_id_conversion.csv and LncBookv1.9_GENCODEv33_GRCh38.gtf.gz -->

lncbook 2.0 metadata on id conversion and gtf annotation file

https://ngdc.cncb.ac.cn/lncbook/ 

doi: 10.1093/nar/gkac999

lncExpDB_E-MTABGeneTPM.tsv -->

LncExpDB RNA-seq data

https://ngdc.cncb.ac.cn/lncexpdb/

doi: 10.1093/nar/gkaa850

RNACentral_ensembl.tsv and RNACentral_lncbook.tsv --> 

RNA central ensembl and lncbook identifiers

https://rnacentral.org/

https://doi.org/10.1093/nar/gkw1008

UCSC_hg19ToHg38.over.chain --> 

Liftover chain file from ucsc genome browser 

https://hgdownload.cse.ucsc.edu/goldenpath/hg19/liftOver/

DOI: 10.1093/nar/gkad987