microbetag : building a thorough database of genome-scale KO annotations

In this repository we keep internal data for the microbetag microbial co-occurrence network annotator. microbetag makes use of 2-column files for each genome, indicating the KO term found and a KEGG module in which this terms takes part into. As a single KO term might participates in more than one KEGG modules, the same KO might be more than once in an annotation file. gtdb_modelseed_gems.zip md5:e3e62b305e64b27da7b80655d7f92f2c for all the GTDB genomes their corresponding PATRIC annotations were gathered. Then, using modelseedpy we constructed their genome scale metabolic reconstructions gtdb_kofam_scan_per_module.tar.gz md5:cbcc9aa1a28a5bd5f6661f832d27bcbf all representative genomes of GTDB (v.202) were parsed and their corresponding `.faa` files were retrieved from the NCBI FTP. Then the kofam_scan tool was used to annotate them and finally a manual script was used to keep KOs of each genome per module.