Additional file 10 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

Additional file 10 Supplementary Table S9. Joint genotyping Minos memory usage and run times. Values were taken from the LSF reports for each Nextflow task (“Max Memory” and “Run time”). The first three stages VCF merge, VCF cluster, and Gramtools build used 10, 20 and 20 CPUs respectively. The run times are quoted here, not total CPU time. 1Minos is run on each sample in parallel. The mean run time per sample and maximum RAM across all samples is shown. 2This process in an intermediate stage used when producing the final merged VCF file. It merges batches of 300 VCF files each into one VCF file. The merged VCF files are then input to the last task VCF final merge. The mean run time for each batch and maximum RAM across all batches is shown.