Data for: Empirical evaluation of analytic validity of polygenic scores

This dataset provides the genomic foundations for the empirical evaluation of polygenic score (PGS) analytic validity, as detailed in the manuscript: “Empirical evaluation of analytic validity of polygenic scores” (Lin et al., 2026).
As PGS research transitions toward clinical and healthcare applications, demonstrating the technical reproducibility and stability of these scores across different laboratory batches and bioinformatics pipelines is essential. This repository provides benchmark data to quantify these effects.