Additional file 2: of Diet-induced remission in chronic enteropathy is associated with altered microbial community structure and synthesis of secondary bile acids

Table S1. OTUs with differential abundances between samples of healthy dogs and dogs with CE at day 0 (Healthy vs CE day 0). Table S2. OTUs with differential abundances between day 0-samples of diet responsive dogs and non-diet responsive dogs. Table S3. Genera with differential abundances between samples of day 14 and day 0 (day 14 versus day 0) for diet responsive dogs. Table S4. OTUs with differential abundances between samples of day 14 and day 0 for diet responsive dogs (day 14 versus day 0). Table S5. OTUs with differential abundances between samples of day 14 and day 0 (day 14 versus day 0) for non-diet responsive dogs. Table S6. Differentially abundant pathways between day 14 and day 0 after diet treatment from metagenomic analysis for diet-responsive dogs (fold-change > 1.5 and P-value < 0.05). Table S7. Comparisons of bile acids in samples at different timepoints for diet responsive dogs. Table S8. Spearman correlations between abundance of OTUs and concentration of Bile acids in diet responsive dogs. Table S9. Spearman correlations between bile acids and bile salt hydolases (BSHs) in diet-responsive dogs (P < 0.05). (XLSX 135 kb)