MOESM9 of Genetic and metabolic signatures of Salmonella enterica subsp. enterica associated with animal sources at the pangenomic scale

Additional file 9. GO-terms enriched by GOEA applied on accessory genes and coregenome variants of Salmonella enterica subsp. enterica serovars (n = 440) associated with animal sources (i.e. avian bovine, swine and fish). The GOEA was performed with the workflow ‘fastGSEA’ based on the parent-child approach integrating hypergeometric tests and Bonferroni corrections. The GOEA input sample is a list of corresponding RefSeq identifiers of accessory genes (i.e. RefSeq from Roary) and coregenome variants (i.e. NP from SNPeff 4.1 g) associated by microbial GWAS. The input universe is a list of RefSeq identifiers of all accessory genes (i.e. RefSeq from Roary) and all core genes (i.e. NP from SNPeff 4.1 g). BP, MF and CC stand for Biological Process, Molecular Function and Cellular Component, respectively.