CAGE peaks annotation (hg38 v3)
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下载链接：
https://figshare.com/articles/dataset/Re-processing_of_the_data_generated_by_the_FANTOM5_project_hg38_v3_CAGE_peaks_annotation/4880072
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资源简介：
Annotation files
= Transcript association
* (Human phase1+2 set) hg38_liftover+new_CAGE_peaks_phase1and2_trans.txt
(Format)
1) CAGE peak ID
"(Old FANTOM5 CAGE Peak ID);(new TSS ID)"
2) Associated transcript ID
3) Distance between CAGE peak and associated transcript
4) Number of transcripts within 500bp (polII transcripts) or 50bp (non-polII transcripts)
5) All transcripts within the above cutoffs (500bp or 50bp)
(Transcript ID:distance)
= Gene/protein association
* (Human phase1+2 set) hg38_liftover+new_CAGE_peaks_phase1and2_annot.txt
(Format)
1) CAGE peak ID
"(Old FANTOM5 CAGE Peak ID);(new TSS ID)"
2) Associated transcript ID
3) Distance between CAGE peak and associated transcript
4) EntrezGene GeneID
5) HGNC/MGI ID
6) UniProt ID
7) Associated gene name
8) Associated gene symbol
9) Associated gene synonym
10) Source of associated gene
= CAGE peak name
* (Human phase1+2 set) human_phase1and2_CAGE_Peak_name.txt
(Format)
1) CAGE peak ID
"(Old FANTOM5 CAGE Peak ID);(new TSS ID)"
2) New CAGE peak name
3) Old (Obsoleted) CAGE peak name
= Annotation sources
Jun. 16th, 2015 snapshots of the following databases
* EntrezGene
* Gencode (Human v22, Mouse vM4)
* HGNC
* MGI
* UCSC Genome Browser (hg38/mm10)
* UniProt
创建时间：
2017-04-17
