DELiVR supporting files (training weights, additional components for inference docker container)
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下载链接：
https://zenodo.org/record/10892755
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资源简介：
Initial Release of the supporting data for the DELiVR cleared-brain analysis pipeline, as described in our 2024 publication:
Virtual reality-empowered deep-learning analysis of brain cells
Kaltenecker, Al-Maskari, Negwer, et al., Nature Methods 2024
https://doi.org/10.1038/s41592-024-02245-2
This repository contains the following datasets:
Training weights for microglia inference
Training weights for c-fos inference (as used in the paper)
The copy of Terastitcher that we used to build the inference container
The copy of mBrainAligner that we used to build the inference container
The Dockerfile that we used to build the inference container
The Ilastik version that we used to build the inference container
Source code for TeraStitcher: https://github.com/abria/TeraStitcher
Source code for mBrainaligner: https://github.com/Vaa3D/vaa3d_tools/tree/master/hackathon/mBrainAligner
Download for this specific version of the Ilastik binaries: https://files.ilastik.org/ilastik-1.4.0b8-Linux.tar.bz2
创建时间：
2024-04-02
