Adaptation of Illumina Sequencing protocols for SRA sequencing using SARS-CoV-2 genomic surveillance programme sequences from South Africa from YYYY-MM-DD to YYYY-MM-DD

Sequences used to study the Rapid and Cost-Effective Adaptation of Illumina DNA Prep for SARS-CoV-2 Next Generation Sequencing. Remnant nasopharyngeal swab samples were obtained from the National Health Laboratory Service as part of a SARS-CoV-2 genomic surveillance programme. Samples were selected for sequencing based on a positive qPCR result, irrespective of the cycle-threshold (Ct) value of the result. Used in the manuscript "Evaluation of miniaturized Illumina DNA preparation protocols for SARS-CoV-2 whole genome sequencing" doi:10.1016/j.chom.2022.01.005.