SNP variation dataset (VCF) from genotyping-by-sequencing of the CF11 mapping family of Labeo catla

This dataset contains the SNP variation data generated from the CF11 mapping family of Labeo catla using genotyping-by-sequencing (GBS). The dataset includes the VCF file containing filtered single nucleotide polymorphisms (SNPs) identified after quality control and filtering. These SNP markers were used for the construction of a high-density genetic linkage map and subsequent genome scaffold anchoring. The dataset corresponds to the study titled: “First high-density SNP-based genetic linkage map and genome scaffold anchoring in Labeo catla”. The repository contains the final SNP variant file in Variant Call Format (VCF) that includes genotype information for the mapping population individuals used in the linkage mapping analysis. File format: VCFVariant calling was performed using the STACKS pipeline and genotype imputation was conducted using Beagle