Chinese Spring WGS vs IWGSC RefSeq v1.0 Genome Assembly

WGS reads of Chinese Spring (ENA: PRJNA392179) were aligned against the IWGSC <i>Triticum aestivum</i> Chinese Spring RefSeq v1.0 genome assembly using Minimap2. These BAM files (.bam) and index files (.bam.bai) are provided together with a summary of read alignment coverage bigWig files (.bam.bw). SNP variants were called from these BAM files to generate VCF files (.bam.vcf.gz) and index files (.bam.vcf.gz.tbi) and are provided together with a summary of SNP density (SNPs per 10 kbp) bigWig files (.bam.vcf.w10000_s10000.bw). VCF files contain the following filter values and corresponding meaning: PASS = high quality (Q&gt;=30) homozygous; Het = high quality (Q&gt;=30) heterozygous; LowQualHom = low quality (Q&lt;30) homozygous; LowQualHet = low quality (Q&lt;30) heterozygous. Files are provided separately for each chromosome part.