Dataset - Intraspecific diversity loss in a predator species alters prey community structure and ecosystem functions

Loss in intraspecific diversity can alter ecosystem functions, but the underlying mechanisms are still elusive, and intraspecific biodiversity-ecosystem function relationships (iBEFs) have been restrained to primary producers. Here, we manipulated genetic and functional richness of a fish consumer (<i>Phoxinus phoxinus</i>), to test whether iBEFs exist in consumer species, and whether they are more likely sustained by genetic or functional richness. We found that both genotypic and functional richness affected ecosystem functioning, either independently or in interaction. Loss in genotypic richness reduced benthic invertebrate diversity consistently across functional richness treatments, whereas it reduced zooplankton diversity only when functional richness was high. Finally, both losses in genotypic and functional richness altered essential functions (e.g. decomposition) through trophic cascades. We concluded that iBEFs lead to substantial top-down effects on entire food chains. The loss of genotypic richness was similarly prejudicial than the loss of functional richness, probably because it sustains “cryptic” functional diversity.