IFN-lambda gut restitution scRNA-seq — WT sample (20230601_10X_RNAseq_WT): Cell Ranger alignment, cell-sorted BAM

Type III interferons induce pyroptosis in gut epithelial cells and impair mucosal repair To investigate the transcriptional program within the intestinal epithelial cells (IECs) controlling the impact of type III interferons (IFN-λ) on intestinal recovery, we performed a single-cell RNA sequencing (scRNA-seq) on murine IECs following irradiation. Mice deficient for the IFN-λ receptor in IECs and wild-type mice underwent targeted irradiation. 96h after irradiation, IECs were isolated by fluorescence-activated cell sorting (FACS) based on the expression of EPCAM and analyzed using scRNA-seq. This record Single archive bam_WT_cellsorted.tar, 1 file, 32.1 GB. Read alignment produced by Cell Ranger, with its .bai index where applicable. Fully regenerable from the raw FASTQ files (GEO) using the published pipeline; provided for convenience only. How to use these records Every archive stores paths relative to the same root, 002_IFNL_Recovery_scRNAseq/. Download the archives you need and extract them all into one empty directory: tar xf *.tar Each file lands in its correct place in the project tree. Taking only the core records gives a complete but lightweight tree; adding rdata or bam records fills it in without overwriting anything.