Data sets and trees used in the paper by Cruaud et al. "Evolution, systematics and biogeography of sand flies of the subgenus Paraphlebotomus (Psychodidae) inferred using restriction-site associated DNA markers." PLOS Negl. Trop. Dis.

Data sets and trees used in the following paper :

Cruaud A, Lehrter V, Genson G, Rasplus J-Y, and Depaquit J. In press. Evolution, systematics and biogeography of sand flies of the subgenus Paraphlebotomus (Psychodidae) inferred using restriction-site associated DNA markers. PLOS Neglected Tropical Diseases.

*.phy = Data sets (phylip format) [see Table 2 for more details]
stacks_M2n6S16L100.sel.phy : stacks n6; radis_nsample_min=50% of the samples
stacks_M2n6S24L100.sel.phy : stacks n6; radis_nsample_min=75% of the samples
stacks_M2n8S16L100.sel.phy : stacks n8; radis_nsample_min=50% of the samples
stacks_M2n8S24L100.sel.phy : stacks n8; radis_nsample_min=75% of the samples
stacks_M2n10S16L100.sel.phy : stacks n10; radis_nsample_min=50% of the samples
stacks_M2n10S24L100.sel.phy : stacks n10; radis_nsample_min=75% of the samples

RAxML*.nwk : RAxML trees (newick format) that were obtained for the different data sets. Trees are also included as Figures or Supplementary Figures in the paper.

timetree_RelTime_M2n10S16L100.tre : RelTime timetree