遇见数据集

Raw data for SWBio RNA-seq computer practical

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Zenodo2025-10-10 更新2026-05-26 收录
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I used seqtk_sample (Galaxy Version 1.5+galaxy0) to downsample 2,000,000 pairs of reads from each of two accessions from the Sequence Read Archive (SRA): SRR1582666 (treatment = "without") SRR1582659 (treatment = "M23_15") Both datasets come from this study: Kim, S., Cho, Y. J., Song, E. S., Lee, S. H., Kim, J. G., & Kang, L. W. (2016). Time-resolved pathogenic gene expression analysis of the plant pathogen Xanthomonas oryzae pv. oryzae. BMC Genomics, 17, 345. https://doi.org/10.1186/s12864-016-2657-7. And the data are also used in this study: Kim, S., Jang, W. E., Park, J., Kim, M. S., Kim, J. G., & Kang, L. W. (2021). Combined Analysis of the Time-Resolved Transcriptome and Proteome of Plant Pathogen Xanthomonas oryzae pv. oryzae. Frontiers in Microbiology, 12, 664857. https://doi.org/10.3389/fmicb.2021.664857.

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2025-10-10
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