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RNA-Seq Analysis

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NIAID Data Ecosystem2026-05-10 收录
下载链接:
https://www.ncbi.nlm.nih.gov/sra/SRP658226
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Total RNA was extracted from the tissue using TRIzol(R) Reagent according to the manufacturers instructions. Then RNA quality was determined by 5300 Bioanalyser (Agilent) and quantified using the ND-2000 (NanoDrop Technologies). The sequencing library was performed on NovaSeq X Plus platform (PE150) using NovaSeq Reagent Kit. Or the sequencing library was performed on DNBSEQ-T7 platform (PE150) using DNBSEQ-T7RS Reagent Kit (FCLPE150) version 3.0. Functional-enrichment analysis including GO and KEGG were performed to identify which DEGs were significantly enriched in GO terms and metabolic pathways at Bonferroni-corrected P-value<0.05 compared with the whole-transcriptome background. GO functional enrichment and KEGG pathway analysis were carried out by Goatools and Python scipy software, respectively.
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2026-02-08
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