stem.MAP: A cell type specific protein complex map for mouse embryonic stem cells (Supplementary Files)

Data files associated with stem.MAP. featmat_MES_Wan_Mallam_IEX_RandomSmallNumber_priors_20240815.featmat.gz : Feature matrix used to create stem.MAP machine learning model. stem_map_10_percent_priors_RandomSmallNumbers_pairwpredictions20240815_20260430_sorted_tsv.pairWprob : All confidence scores for protein pairs evaluated by stem.MAP stem_map_pairs_inference_20260927.tgz : AlphaFold3 structural models for ~1,300 confident stem.MAP predictions supplemental_table_stem_MAP_ipsae_no_priors_0p9_20261006.xlsx : Confidence values for structural models of stem.MAP protein pairs without hu.MAP3 priors. aydin_2023_mesc_co_abundance_Pearson_R_20260325.pairWpearsonR : Pearson correlation coefficients for protein pairs in Aydin et al. [PMID: 37082146]. stemmap_retrain_v2_ALL_edges_20261102.cys : Cytoscape network of stem.MAP complexes.