p_paraeruginosa_allstrains_allcontigs.fasta

This database file contains the sequences of all 7 complete genomes and all contigs of 75 draft genomes of the novel species <i>Pseudomonas paraeruginosa. </i>Currently only a few of these have been correctly identified in NCBI; most are still called <i>Pseudomonas aeruginosa</i>. DNA and protein searches (blastn, tblastn) using the NCBI wgs database, limited to the genus <i>Pseudomonas</i>, are very slow and often exceed CPU limits. This database (~580Mb) can be searched using Pearson's fasta36 or tfastx36 (among other tools) in under a minute on a personal computer e.g. MacBook Pro.