Additional file 1 of Chromosome-level genome assembly and population genomic analyses provide insights into adaptive evolution of the red turpentine beetle, Dendroctonus valens

Additional file 1: Table S1. Summary statistics of genome sequencing data of Dendroctonus valens. Table S2. Summary statistics of genome assembly of Dendroctonus valens. Table S3. BUSCO evaluation result for genome assembly of Dendroctonus valens. Table S4. Summary statistics of transposable elements in Dendroctonus valens genome. Table S5. Summary of gene families manually curated in Dendroctonus valens genome. Table S6. Summary statistics of genome annotation in Dendroctonus valens genome. Table S7. List of gene families that are unique in Dendroctonus valens compared to other three Coleoptera species. Table S8. Gene families that are rapidly expanded in Dendroctonus valens revealed by CAFE analysis. Table S9. Gene families that are rapidly contracted in Dendroctonus valens revealed by CAFE analysis. Table S10. List of genes that are positively selected in Dendroctonus valens revealed by codeml analysis. Table S11. Gene ontology enrichment result of positively selected genes in Dendroctonus valens. Table S12. Sampling site information for genome resequencing of geographical populations. Table S13. Summary statistics of genome resequencing data in different populations. Table S14. List of genes that undergo selective sweep in the China population compared to CAMT population.

附加文件 1：表 S1. Dendroctonus valens 基因组测序数据摘要统计。表 S2. Dendroctonus valens 基因组组装摘要统计。表 S3. Dendroctonus valens 基因组组装 BUSCO 评估结果。表 S4. Dendroctonus valens 基因组中转座元件的摘要统计。表 S5. Dendroctonus valens 基因组中手动整理的基因家族概要。表 S6. Dendroctonus valens 基因组注释的摘要统计。表 S7. 与其他三种鞘翅目物种相比，Dendroctonus valens 中独特的基因家族列表。表 S8. 通过 CAFE 分析揭示的 Dendroctonus valens 中快速扩大的基因家族。表 S9. 通过 CAFE 分析揭示的 Dendroctonus valens 中快速收缩的基因家族。表 S10. 通过 codeml 分析揭示的 Dendroctonus valens 中正向选择的基因列表。表 S11. Dendroctonus valens 中正向选择基因的功能富集分析结果。表 S12. 地理种群基因组重测序的采样点信息。表 S13. 不同种群中基因组重测序数据的摘要统计。表 S14. 与 CAMT 种群相比，在中国种群中进行选择性洗牌的基因列表。