Core genome phylogenies of HSV-1 clinical and global isolates
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Phylogenetic trees of core SNP alignments (see parsnp alignment https://figshare.com/account/projects/63368/articles/8088605) were produced in IQ-TREE (v1.5.5) using a GTR gamma model optimised using the built-in model test, with 1000 ultrafast parametric bootstraps.
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2019-05-29
