VEPs optimal thresholds per regions

Name: VEPs optimal thresholds per regions
Creator: Fawzy, Mohamed
Published: 2025-04-01T00:00:00+08:00

Figshare2025-04-01 更新2026-04-08 收录

蛋白质结构预测

基因组功能注释

数据链接：

https://figshare.com/articles/dataset/VEPs_optimal_thresholds_per_regions/28697090/1 数据链接链接失效反馈

官方服务：

资源简介：

This file contains VEPs optimal thresholds for different protein structural regions

提供机构：

Fawzy, Mohamed

创建时间：

2025-04-01

MassiveFold data for target T1266

蛋白质结构预测

生物信息学

MassiveFold data generated for CASP16, in collaboration with CAPRI . 8040 predictions were generated for the target = 1005 x 8 sets of parameters. - a description of the setup can be found in `Massive

DataCite Commons2025-05-14 更新60

High Quality MAGs - Protein Sequences

基因组功能注释

微生物蛋白质组分析

Protein sequences for protein coding sequences annotated by Prokka for sequence data binned into each of the six identified high quality, low contamination, MAG bins. Protein sequences were submitted

Figshare2022-05-23 更新40

Helical packing arrangement decoy discrimination using a data set of 71 sequences with 2 or more TM helices (n = 71) and a data set of 57 sequences with 3 or more helices (n = 57).

蛋白质结构预测

跨膜螺旋堆积判别

Accuracy reflects the frequency at which the native or native model helical packing arrangement achieved the highest score compared to the decoy set.

NIAID Data Ecosystem30

Additional file 4: of Functional insights from proteome-wide structural modeling of Treponema pallidum subspecies pallidum, the causative agent of syphilis

蛋白质结构预测

梅毒病原体功能注释

Table S4. Comparison of T. pallidum primary and tertiary structure-based functional annotations using only the top-ranked Phyre2 model template for each protein comparison. (XLSX 33 kb)

NIAID Data Ecosystem40

PDB coordinates of the first model for the complex between human UPF1-HD and SMG6-[398–494] region generated by AlphaFold (v3).

蛋白质结构预测

分子相互作用

PDB coordinates of the first model for the complex between human UPF1-HD and SMG6-[398–494] region generated by AlphaFold (v3).

NIAID Data Ecosystem30