Recombination rate variation in Cardiocondyla obscurior

Datasets produced to analyze recombination rate variation in C. obscurior. This includes the following files: - TEislands.w250kb.bed: bed file with coordinates of TE islands - final.metrics.in250kbwindows.tsv: tsv file with various metrics estimated in 250-kb nonoverlapping windows. These metrics include recombination rates, population genomics estimates as well as other sequence parameters (e.g. TE/gene content) - introgression.250kb.bed: bed files with coordinates of regions with substantially high Dxy between grandparental haplotypes - manuallyCurated.markers.forR.txt: formatted and manually curated MSTmap output - Cobs3.1.chrom-size.txt: chromosome length - manuallyCurated.markers.correctPhase.xlsx: markers used to produce reference genetic map with the correct phase - SVs folder: contains: ---- sv.bed.filtered.repeat.0.2.txt: coordinates of SVs with less than 0.2 repeat content ---- sv.type.recomb.repeat.freq.all.txt: coordinates and frequencies of all SVs as well as their repeat content (meanperc column) and the corresponding recombination rate