Lentiviral barcoding ground-truth datasets for benchmarking mtDNA-based lineage tracing
收藏NIAID Data Ecosystem2026-05-10 收录
下载链接：
https://figshare.com/articles/dataset/Lenti-viaral_barcoding_based_lineage_tracing_benchmarking_datasets/31323481
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资源简介：
This folder collects the finalized inputs used for the pLarry1000 benchmark and
downstream analyses. These files are for reproducing Lentiviral
barcoding validation for the manuscript titled "Modeling mitochondrial
inheritance enables high-precision single-cell lineage tracing in humans"
(Gao, Weng et. al).
Contents are copied from the main pipeline directories and include:
- redeemV output (`final/`) used to generate redeemR filter1/filter2 objects
- mitodrift long matrix (`pL1000_full_mut_dat.csv`)
- mitodrift tree (`tree_annotated.newick`)
- static barcode annotations (`pL1000_barcode_annot_cleaned.csv`, `pL1000_barcode_annot_final.csv`)
- mgatk output (copied as `mgatk_output_final/`)
- Seurat object (`pLarry_seurat_pL1000.rds`)
创建时间：
2026-02-12
